Title: Detection of treatment-subgroup interactions in clustered datasets: Combining model-based recursive partitioning and random-effects estimation. Author: Marjolein Fokkema, Niels Smits, Achim Zeileis, Torsten Hothorn, Henk Kelderman Affiliation: VU University Amsterdam Abstract: Identification of subgroups of patients for which treatment A is more effective than treatment B, and vice versa, is of key importance to the development of personalized medicine. Several tree-based algorithms have been developed for detection of such treatment-subgroup interactions in datasets from single randomized clinical trials (RCTs). In many instances, however, datasets from several RCTs are pooled, or single RCTs are carried out in multiple research centers, introducing a clustered data structure. In the current paper, we propose an algorithm that allows for the detection of treatment-subgroup interactions, as well as the estimation of cluster-specific random effects. The new algorithm uses model-based recursive partitioning (Zeileis et al., 2008) to detect treatment-subgroups interactions, and a linear mixed-effects model (Pinheiro & Bates, 2000) for estimation of random-effects parameters. In a simulation study, we evaluate the performance of the new algorithm, in terms of recovery of treatment-subgroup interactions and prediction of treatment differences, and compare it with that of model-based recursive partitioning without random effects. The new algorithm outperformed model-based recursive partitioning without random effect in terms of recovery of true treatment-subgroup interactions, and prediction of differences in treatment effects. We conclude that the new algorithm is an accurate and promising algorithm for the detection of treatment-subgroup interactions in clustered datasets, and discuss directions for future research.